HL_9PBE_069

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9PBE|1|L5|G|4694, 9PBE|1|L5|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|C|4688
9PBE|1|L5|PSU|4689
9PBE|1|L5|G|4690
9PBE|1|L5|A|4691
9PBE|1|L5|A|4692
9PBE|1|L5|C|4693
9PBE|1|L5|G|4694
9PBE|1|L5|C|4695
9PBE|1|L5|C|4696
9PBE|1|L5|U|4697
9PBE|1|L5|C|4698
9PBE|1|L5|U|4699
9PBE|1|L5|A|4700
9PBE|1|L5|A|4701
9PBE|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Large ribosomal subunit protein eL40