HL_9PBE_072

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

9PBE|1|L5|C|5023, 9PBE|1|L5|C|5024, 9PBE|1|L5|C|5025, 9PBE|1|L5|U|5026, 9PBE|1|L5|C|5027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PBE_072 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.3325

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.11

Basepair signature

cWW-F

Number of instances in this motif group

25

Unit IDs

9PBE|1|L5|C|5021
9PBE|1|L5|U|5022
9PBE|1|L5|C|5023
9PBE|1|L5|C|5024
9PBE|1|L5|C|5025
9PBE|1|L5|U|5026
9PBE|1|L5|C|5027
9PBE|1|L5|G|5028

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LU

Heparin-binding protein HBp15

Chain SI

40S ribosomal protein S8