HL_9PBE_089

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

9PBE|1|S2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|S2|G|377
9PBE|1|S2|U|378
9PBE|1|S2|C|379
9PBE|1|S2|G|380
9PBE|1|S2|C|381
9PBE|1|S2|C|382
9PBE|1|S2|G|383
9PBE|1|S2|U|384
9PBE|1|S2|G|385
9PBE|1|S2|C|386
9PBE|1|S2|C|387

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11