HL_9PBE_091

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9PBE|1|S2|C|450, 9PBE|1|S2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|S2|C|441
9PBE|1|S2|C|442
9PBE|1|S2|U|443
9PBE|1|S2|G|444
9PBE|1|S2|A|445
9PBE|1|S2|G|446
9PBE|1|S2|A|447
9PBE|1|S2|A|448
9PBE|1|S2|A|449
9PBE|1|S2|C|450
9PBE|1|S2|G|451
9PBE|1|S2|G|452

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8

Chain SY

40S ribosomal protein S24