HL_9PBE_092
3D structure
- PDB id
- 9PBE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome (composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- (OMC)CAAGG
- Length
- 6 nucleotides
- Bulged bases
- 9PBE|1|S2|A|464
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PBE_092 not in the Motif Atlas
- Homologous match to HL_9H3G_087
- Geometric discrepancy: 0.1058
- The information below is about HL_9H3G_087
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_61337.7
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 72
Unit IDs
9PBE|1|S2|OMC|462
9PBE|1|S2|C|463
9PBE|1|S2|A|464
9PBE|1|S2|A|465
9PBE|1|S2|G|466
9PBE|1|S2|G|467
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LV
- 60S ribosomal protein L23
- Chain SG
- 40S ribosomal protein S6
Coloring options: