HL_9PDF_012

3D structure

PDB id

9PDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Three-dimensional structure of kinase inhibitor Palbociclib-HIV TAR complex

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUGGGG

Length

6 nucleotides

Bulged bases

9PDF|12|A|G|32, 9PDF|12|A|G|33, 9PDF|12|A|G|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PDF_012 not in the Motif Atlas

Geometric match to HL_9HRF_002

Geometric discrepancy: 0.2385

The information below is about HL_9HRF_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9PDF|12|A|C|30
9PDF|12|A|U|31
9PDF|12|A|G|32
9PDF|12|A|G|33
9PDF|12|A|G|34
9PDF|12|A|G|35

Current chains

Chain A

RNA (29-MER)

Nearby chains