HL_9PG8_033

3D structure

PDB id

9PG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

U(OMU)(OMG)UUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PG8_033 not in the Motif Atlas

Homologous match to HL_7A0S_061

Geometric discrepancy: 0.2233

The information below is about HL_7A0S_061

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9PG8|1|A|U|3038
9PG8|1|A|OMU|3039
9PG8|1|A|OMG|3040
9PG8|1|A|U|3041
9PG8|1|A|U|3042
9PG8|1|A|C|3043
9PG8|1|A|A|3044

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains