HL_9PGI_012

3D structure

PDB id

9PGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P-E state with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

9PGI|1|A|A|2110, 9PGI|1|A|G|2113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PGI_012 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2656

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9PGI|1|A|G|2107
9PGI|1|A|G|2108
9PGI|1|A|A|2109
9PGI|1|A|A|2110
9PGI|1|A|C|2111
9PGI|1|A|A|2112
9PGI|1|A|G|2113
9PGI|1|A|C|2114

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial