HL_9PGI_058

3D structure

PDB id

9PGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P-E state with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UAACUAA

Length

7 nucleotides

Bulged bases

9PGI|1|AA|C|1525, 9PGI|1|AA|U|1526

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PGI_058 not in the Motif Atlas

Geometric match to HL_7ENI_002

Geometric discrepancy: 0.235

The information below is about HL_7ENI_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19413.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

9PGI|1|AA|U|1522
9PGI|1|AA|A|1523
9PGI|1|AA|A|1524
9PGI|1|AA|C|1525
9PGI|1|AA|U|1526
9PGI|1|AA|A|1527
9PGI|1|AA|A|1528

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain AV

28S ribosomal protein S27, mitochondrial