HL_9PGL_053

3D structure

PDB id

9PGL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUGAA

Length

7 nucleotides

Bulged bases

9PGL|1|AA|A|1283, 9PGL|1|AA|U|1284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PGL_053 not in the Motif Atlas

Geometric match to HL_9AXU_017

Geometric discrepancy: 0.368

The information below is about HL_9AXU_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9PGL|1|AA|U|1281
9PGL|1|AA|G|1282
9PGL|1|AA|A|1283
9PGL|1|AA|U|1284
9PGL|1|AA|G|1285
9PGL|1|AA|A|1286
9PGL|1|AA|A|1287

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AB

28S ribosomal protein S2, mitochondrial

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AE

28S ribosomal protein S6, mitochondrial

Chain AS

28S ribosomal protein S23, mitochondrial