HL_9PGM_025
3D structure
- PDB id
- 9PGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- GUGAAGAGGC
- Length
- 10 nucleotides
- Bulged bases
- 9PGM|1|A|A|2693, 9PGM|1|A|A|2694, 9PGM|1|A|G|2695
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PGM_025 not in the Motif Atlas
- Homologous match to HL_7A0S_049
- Geometric discrepancy: 0.2024
- The information below is about HL_7A0S_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9PGM|1|A|G|2690
9PGM|1|A|U|2691
9PGM|1|A|G|2692
9PGM|1|A|A|2693
9PGM|1|A|A|2694
9PGM|1|A|G|2695
9PGM|1|A|A|2696
9PGM|1|A|G|2697
9PGM|1|A|G|2698
9PGM|1|A|C|2699
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 0
- 39S ribosomal protein L32, mitochondrial
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
- Chain r
- 39S ribosomal protein S18a, mitochondrial
Coloring options: