HL_9PGM_027
3D structure
- PDB id
- 9PGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- UUG(OMG)GGCGA
- Length
- 9 nucleotides
- Bulged bases
- 9PGM|1|A|G|2814
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PGM_027 not in the Motif Atlas
- Homologous match to HL_7A0S_052
- Geometric discrepancy: 0.1201
- The information below is about HL_7A0S_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11974.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
9PGM|1|A|U|2812
9PGM|1|A|U|2813
9PGM|1|A|G|2814
9PGM|1|A|OMG|2815
9PGM|1|A|G|2816
9PGM|1|A|G|2817
9PGM|1|A|C|2818
9PGM|1|A|G|2819
9PGM|1|A|A|2820
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain Ax
- P/P-tRNA
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
Coloring options: