HL_9PGM_035

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PGM_035 not in the Motif Atlas

Geometric match to HL_6TFF_001

Geometric discrepancy: 0.1204

The information below is about HL_6TFF_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9PGM|1|A|C|3126
9PGM|1|A|G|3127
9PGM|1|A|A|3128
9PGM|1|A|A|3129
9PGM|1|A|A|3130
9PGM|1|A|G|3131

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains