HL_9PGM_039

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PGM_039 not in the Motif Atlas

Homologous match to HL_6CZR_072

Geometric discrepancy: 0.1943

The information below is about HL_6CZR_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.4

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9PGM|1|AA|U|654
9PGM|1|AA|U|655
9PGM|1|AA|U|656
9PGM|1|AA|G|657
9PGM|1|AA|G|658
9PGM|1|AA|U|659
9PGM|1|AA|C|660
9PGM|1|AA|C|661
9PGM|1|AA|U|662
9PGM|1|AA|A|663
9PGM|1|AA|G|664

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain Az

mRNA