HL_9PIH_004

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9PIH|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PIH_004 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.2723

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9PIH|1|A|G|259
9PIH|1|A|G|260
9PIH|1|A|U|261
9PIH|1|A|A|262
9PIH|1|A|A|263
9PIH|1|A|C|264
9PIH|1|A|G|265
9PIH|1|A|G|266
9PIH|1|A|C|267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17

Chain T

Small ribosomal subunit protein bS20