HL_9PIH_010

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9PIH|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PIH_010 not in the Motif Atlas

Geometric match to HL_8B0X_011

Geometric discrepancy: 0.135

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9PIH|1|A|G|462
9PIH|1|A|U|463
9PIH|1|A|U|464
9PIH|1|A|A|465
9PIH|1|A|A|466
9PIH|1|A|U|467
9PIH|1|A|A|468
9PIH|1|A|C|469
9PIH|1|A|C|470

Current chains

Chain A

16S ribosomal RNA

Nearby chains