HL_9PIH_011

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAGCC(G7M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PIH_011 not in the Motif Atlas

Homologous match to HL_6CZR_216

Geometric discrepancy: 0.2274

The information below is about HL_6CZR_216

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9PIH|1|A|C|522
9PIH|1|A|A|523
9PIH|1|A|G|524
9PIH|1|A|C|525
9PIH|1|A|C|526
9PIH|1|A|G7M|527

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12