HL_9PIH_026

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

9PIH|1|A|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PIH_026 not in the Motif Atlas

Homologous match to HL_6CZR_101

Geometric discrepancy: 0.1891

The information below is about HL_6CZR_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9PIH|1|A|G|1356
9PIH|1|A|A|1357
9PIH|1|A|U|1358
9PIH|1|A|C|1359
9PIH|1|A|A|1360
9PIH|1|A|G|1361
9PIH|1|A|A|1362
9PIH|1|A|A|1363
9PIH|1|A|U|1364
9PIH|1|A|G|1365
9PIH|1|A|C|1366

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14