HL_9PIH_027

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9PIH|1|A|U|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PIH_027 not in the Motif Atlas

Geometric match to HL_9FN2_003

Geometric discrepancy: 0.1345

The information below is about HL_9FN2_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9PIH|1|A|C|1449
9PIH|1|A|U|1450
9PIH|1|A|U|1451
9PIH|1|A|C|1452
9PIH|1|A|G|1453
9PIH|1|A|G|1454

Current chains

Chain A

16S ribosomal RNA

Nearby chains