HL_9PIH_076

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

9PIH|1|a|A|1913

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PIH_076 not in the Motif Atlas

Geometric match to HL_9H3G_052

Geometric discrepancy: 0.0842

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.2

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9PIH|1|a|G|1910
9PIH|1|a|PSU|1911
9PIH|1|a|A|1912
9PIH|1|a|A|1913
9PIH|1|a|C|1914
9PIH|1|a|3TD|1915
9PIH|1|a|A|1916
9PIH|1|a|PSU|1917
9PIH|1|a|A|1918
9PIH|1|a|A|1919
9PIH|1|a|C|1920

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Z

Transfer RNA; tRNA