HL_9PII_059

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PII_059 not in the Motif Atlas

Homologous match to HL_7A0S_031

Geometric discrepancy: 0.1469

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9PII|1|a|U|1222
9PII|1|a|G|1223
9PII|1|a|U|1224
9PII|1|a|G|1225
9PII|1|a|A|1226
9PII|1|a|G|1227

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15

Chain p

50S ribosomal protein L20

Chain q

Ribosomal protein L21