HL_9PII_065

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

9PII|1|a|C|1493, 9PII|1|a|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PII_065 not in the Motif Atlas

Homologous match to HL_7A0S_037

Geometric discrepancy: 0.4676

The information below is about HL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39243.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9PII|1|a|G|1492
9PII|1|a|C|1493
9PII|1|a|A|1494
9PII|1|a|A|1495
9PII|1|a|A|1496
9PII|1|a|U|1497
9PII|1|a|C|1498

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2