HL_9PII_068

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

9PII|1|a|A|1614, 9PII|1|a|A|1616, 9PII|1|a|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PII_068 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.0962

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9PII|1|a|C|1612
9PII|1|a|G|1613
9PII|1|a|A|1614
9PII|1|a|C|1615
9PII|1|a|A|1616
9PII|1|a|C|1617
9PII|1|a|6MZ|1618
9PII|1|a|G|1619

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain r

50S ribosomal protein L22