HL_9PII_082

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PII_082 not in the Motif Atlas

Geometric match to HL_8B0X_101

Geometric discrepancy: 0.0833

The information below is about HL_8B0X_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9PII|1|a|G|2304
9PII|1|a|U|2305
9PII|1|a|C|2306
9PII|1|a|G|2307
9PII|1|a|G|2308
9PII|1|a|A|2309
9PII|1|a|C|2310
9PII|1|a|A|2311
9PII|1|a|U|2312

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

Large ribosomal subunit protein uL5