HL_9PIJ_010

3D structure

PDB id

9PIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9PIJ|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PIJ_010 not in the Motif Atlas

Geometric match to HL_8B0X_011

Geometric discrepancy: 0.1365

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9PIJ|1|A|G|462
9PIJ|1|A|U|463
9PIJ|1|A|U|464
9PIJ|1|A|A|465
9PIJ|1|A|A|466
9PIJ|1|A|U|467
9PIJ|1|A|A|468
9PIJ|1|A|C|469
9PIJ|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains