HL_9PIJ_057

3D structure

PDB id

9PIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

9PIJ|1|a|U|958, 9PIJ|1|a|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PIJ_057 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1598

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9PIJ|1|a|PSU|955
9PIJ|1|a|G|956
9PIJ|1|a|C|957
9PIJ|1|a|U|958
9PIJ|1|a|A|959
9PIJ|1|a|A|960
9PIJ|1|a|C|961
9PIJ|1|a|G|962

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16