HL_9PIJ_078
3D structure
- PDB id
- 9PIJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUG(6MZ)AGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 9PIJ|1|a|6MZ|2030, 9PIJ|1|a|A|2031, 9PIJ|1|a|G|2032
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PIJ_078 not in the Motif Atlas
- Homologous match to HL_7A0S_049
- Geometric discrepancy: 0.2122
- The information below is about HL_7A0S_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9PIJ|1|a|G|2027
9PIJ|1|a|U|2028
9PIJ|1|a|G|2029
9PIJ|1|a|6MZ|2030
9PIJ|1|a|A|2031
9PIJ|1|a|G|2032
9PIJ|1|a|A|2033
9PIJ|1|a|U|2034
9PIJ|1|a|G|2035
9PIJ|1|a|C|2036
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain q
- Ribosomal protein L21
- Chain z
- 50S ribosomal protein L32
Coloring options: