HL_9PJ8_009

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ8_009 not in the Motif Atlas

Homologous match to HL_6CZR_081

Geometric discrepancy: 0.2062

The information below is about HL_6CZR_081

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9PJ8|1|A|C|381
9PJ8|1|A|G|382
9PJ8|1|A|G|383
9PJ8|1|A|A|384
9PJ8|1|A|A|385
9PJ8|1|A|G|386

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16