HL_9PJ8_018

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ8_018 not in the Motif Atlas

Homologous match to HL_6CZR_090

Geometric discrepancy: 0.18

The information below is about HL_6CZR_090

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9PJ8|1|A|C|846
9PJ8|1|A|U|847
9PJ8|1|A|A|848
9PJ8|1|A|A|849
9PJ8|1|A|C|850
9PJ8|1|A|G|851

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain H

30S ribosomal protein S8