HL_9PJ8_020
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAU(2MG)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 9PJ8|1|A|G|955
- QA status
- Modified nucleotides: 2MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PJ8_020 not in the Motif Atlas
- Homologous match to HL_6CZR_092
- Geometric discrepancy: 0.19
- The information below is about HL_6CZR_092
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9PJ8|1|A|G|947
9PJ8|1|A|A|948
9PJ8|1|A|U|949
9PJ8|1|A|2MG|950
9PJ8|1|A|5MC|951
9PJ8|1|A|A|952
9PJ8|1|A|A|953
9PJ8|1|A|C|954
9PJ8|1|A|G|955
9PJ8|1|A|C|956
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- Transfer RNA; tRNA
- Chain J
- 30S ribosomal protein S9
- Chain M
- Small ribosomal subunit protein uS10
- Chain N
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S14 type Z
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