HL_9PJ8_030

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

C(2MG)G(MA6)(MA6)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 2MG, MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ8_030 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.1533

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9PJ8|1|A|C|1502
9PJ8|1|A|2MG|1503
9PJ8|1|A|G|1504
9PJ8|1|A|MA6|1505
9PJ8|1|A|MA6|1506
9PJ8|1|A|G|1507

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

AURKAIP1/COX24 domain-containing protein

Chain a

Large subunit ribosomal RNA; LSU rRNA