HL_9PJ8_054

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAUAAG

Length

7 nucleotides

Bulged bases

9PJ8|1|a|U|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ8_054 not in the Motif Atlas

Geometric match to HL_5O6U_001

Geometric discrepancy: 0.1334

The information below is about HL_5O6U_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9PJ8|1|a|C|727
9PJ8|1|a|G|728
9PJ8|1|a|A|729
9PJ8|1|a|U|730
9PJ8|1|a|A|731
9PJ8|1|a|A|732
9PJ8|1|a|G|733

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L33

Chain 2

Large ribosomal subunit protein bL35

Chain k

50S ribosomal protein L15