HL_9PJ8_058

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

9PJ8|1|a|U|912, 9PJ8|1|a|G|915

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ8_058 not in the Motif Atlas

Homologous match to HL_7A0S_024

Geometric discrepancy: 0.1942

The information below is about HL_7A0S_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.2

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

9PJ8|1|a|U|911
9PJ8|1|a|U|912
9PJ8|1|a|U|913
9PJ8|1|a|A|914
9PJ8|1|a|G|915
9PJ8|1|a|G|916

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15