HL_9PJ8_060
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- G(PSU)GAUAAGCU
- Length
- 10 nucleotides
- Bulged bases
- 9PJ8|1|a|U|1041, 9PJ8|1|a|G|1044
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PJ8_060 not in the Motif Atlas
- Geometric match to HL_3RG5_006
- Geometric discrepancy: 0.2926
- The information below is about HL_3RG5_006
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_87268.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9PJ8|1|a|G|1037
9PJ8|1|a|PSU|1038
9PJ8|1|a|G|1039
9PJ8|1|a|A|1040
9PJ8|1|a|U|1041
9PJ8|1|a|A|1042
9PJ8|1|a|A|1043
9PJ8|1|a|G|1044
9PJ8|1|a|C|1045
9PJ8|1|a|U|1046
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain V
- 50S ribosomal protein bL37
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: