HL_9PJ8_071

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUAAAUC

Length

7 nucleotides

Bulged bases

9PJ8|1|a|U|1673, 9PJ8|1|a|U|1677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ8_071 not in the Motif Atlas

Homologous match to HL_7A0S_037

Geometric discrepancy: 0.5145

The information below is about HL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39243.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9PJ8|1|a|G|1672
9PJ8|1|a|U|1673
9PJ8|1|a|A|1674
9PJ8|1|a|A|1675
9PJ8|1|a|A|1676
9PJ8|1|a|U|1677
9PJ8|1|a|C|1678

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2