HL_9PJ8_082

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

9PJ8|1|a|A|2096

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ8_082 not in the Motif Atlas

Geometric match to HL_9H3G_052

Geometric discrepancy: 0.1088

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.2

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9PJ8|1|a|G|2093
9PJ8|1|a|PSU|2094
9PJ8|1|a|A|2095
9PJ8|1|a|A|2096
9PJ8|1|a|C|2097
9PJ8|1|a|3TD|2098
9PJ8|1|a|A|2099
9PJ8|1|a|PSU|2100
9PJ8|1|a|A|2101
9PJ8|1|a|A|2102
9PJ8|1|a|C|2103

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain C

Transfer RNA; tRNA