HL_9PJ9_011

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ9_011 not in the Motif Atlas

Homologous match to HL_6CZR_083

Geometric discrepancy: 0.5116

The information below is about HL_6CZR_083

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9PJ9|1|A|C|456
9PJ9|1|A|G|457
9PJ9|1|A|U|458
9PJ9|1|A|G|459
9PJ9|1|A|A|460
9PJ9|1|A|G|461

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16