HL_9PJ9_031
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CAGCUGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 9PJ9|1|C|U|17, 9PJ9|1|C|G|18, 9PJ9|1|C|G|19, 9PJ9|1|C|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PJ9_031 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1511
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9PJ9|1|C|C|13
9PJ9|1|C|A|14
9PJ9|1|C|G|15
9PJ9|1|C|C|16
9PJ9|1|C|U|17
9PJ9|1|C|G|18
9PJ9|1|C|G|19
9PJ9|1|C|U|20
9PJ9|1|C|A|21
9PJ9|1|C|G|22
Current chains
- Chain C
- initiator tRNA Met
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L5
Coloring options: