HL_9PJ9_040

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAAGUG

Length

6 nucleotides

Bulged bases

9PJ9|1|a|G|235

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ9_040 not in the Motif Atlas

Homologous match to HL_7A0S_007

Geometric discrepancy: 0.4515

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

9PJ9|1|a|C|232
9PJ9|1|a|A|233
9PJ9|1|a|A|234
9PJ9|1|a|G|235
9PJ9|1|a|U|236
9PJ9|1|a|G|237

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15