HL_9PJ9_057

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

9PJ9|1|a|A|866, 9PJ9|1|a|G|869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ9_057 not in the Motif Atlas

Geometric match to HL_8B0X_054

Geometric discrepancy: 0.0506

The information below is about HL_8B0X_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

9PJ9|1|a|U|864
9PJ9|1|a|G|865
9PJ9|1|a|A|866
9PJ9|1|a|A|867
9PJ9|1|a|A|868
9PJ9|1|a|G|869
9PJ9|1|a|G|870

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2