HL_9PJ9_076

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUUUGG

Length

6 nucleotides

Bulged bases

9PJ9|1|a|U|1877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ9_076 not in the Motif Atlas

Homologous match to HL_7A0S_042

Geometric discrepancy: 0.1537

The information below is about HL_7A0S_042

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9PJ9|1|a|C|1875
9PJ9|1|a|U|1876
9PJ9|1|a|U|1877
9PJ9|1|a|U|1878
9PJ9|1|a|G|1879
9PJ9|1|a|G|1880

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain X

AURKAIP1/COX24 domain-containing protein

Chain c

50S ribosomal protein L2