HL_9PJ9_088

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUUGGUAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ9_088 not in the Motif Atlas

Geometric match to HL_8B0X_101

Geometric discrepancy: 0.1533

The information below is about HL_8B0X_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9PJ9|1|a|G|2486
9PJ9|1|a|U|2487
9PJ9|1|a|U|2488
9PJ9|1|a|G|2489
9PJ9|1|a|G|2490
9PJ9|1|a|U|2491
9PJ9|1|a|A|2492
9PJ9|1|a|A|2493
9PJ9|1|a|U|2494

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L5