HL_9PJ9_097

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ9_097 not in the Motif Atlas

Homologous match to HL_7A0S_063

Geometric discrepancy: 0.0908

The information below is about HL_7A0S_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9PJ9|1|a|C|2840
9PJ9|1|a|G|2841
9PJ9|1|a|A|2842
9PJ9|1|a|G|2843
9PJ9|1|a|A|2844
9PJ9|1|a|G|2845

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L6