HL_9PJ9_101

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGAGAUGAU

Length

9 nucleotides

Bulged bases

9PJ9|1|a|G|3000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ9_101 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.4357

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.2

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9PJ9|1|a|A|2999
9PJ9|1|a|G|3000
9PJ9|1|a|A|3001
9PJ9|1|a|G|3002
9PJ9|1|a|A|3003
9PJ9|1|a|U|3004
9PJ9|1|a|G|3005
9PJ9|1|a|A|3006
9PJ9|1|a|U|3007

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

Large ribosomal subunit protein bL17