HL_9PJ9_105

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGGGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ9_105 not in the Motif Atlas

Homologous match to HL_7A0S_070

Geometric discrepancy: 0.2084

The information below is about HL_7A0S_070

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9PJ9|1|b|A|86
9PJ9|1|b|G|87
9PJ9|1|b|G|88
9PJ9|1|b|G|89
9PJ9|1|b|A|90
9PJ9|1|b|U|91

Current chains

Chain b

5S rRNA

Nearby chains

Chain V

50S ribosomal protein bL37

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain l

50S ribosomal protein L16