HL_9PKB_013

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UCG

Length

3 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PKB_013 not in the Motif Atlas

Geometric match to HL_4V9F_004

Geometric discrepancy: 0.3416

The information below is about HL_4V9F_004

Detailed Annotation

Mini UNCG related

Broad Annotation

Mini UNCG related

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

9PKB|1|L5|U|989
9PKB|1|L5|C|990
9PKB|1|L5|G|1064

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6