HL_9PKB_026

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGGCCGAAACGAUCU

Length

15 nucleotides

Bulged bases

9PKB|1|L5|C|1763, 9PKB|1|L5|A|1765, 9PKB|1|L5|A|1766, 9PKB|1|L5|A|1767, 9PKB|1|L5|G|1769

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKB|1|L5|G|1759
9PKB|1|L5|G|1760
9PKB|1|L5|G|1761
9PKB|1|L5|C|1762
9PKB|1|L5|C|1763
9PKB|1|L5|G|1764
9PKB|1|L5|A|1765
9PKB|1|L5|A|1766
9PKB|1|L5|A|1767
9PKB|1|L5|C|1768
9PKB|1|L5|G|1769
9PKB|1|L5|A|1770
9PKB|1|L5|U|1771
9PKB|1|L5|C|1772
9PKB|1|L5|U|1773

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain SP

Small ribosomal subunit protein uS19