HL_9PKB_059

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GACAUGAGAACUCUGAUCGUU

Length

21 nucleotides

Bulged bases

9PKB|1|L5|A|3947, 9PKB|1|L5|C|3948, 9PKB|1|L5|A|3954, 9PKB|1|L5|A|4056, 9PKB|1|L5|C|4057, 9PKB|1|L5|U|4058

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKB|1|L5|G|3946
9PKB|1|L5|A|3947
9PKB|1|L5|C|3948
9PKB|1|L5|A|3949
9PKB|1|L5|U|3950
9PKB|1|L5|G|3951
9PKB|1|L5|A|3952
9PKB|1|L5|G|3953
9PKB|1|L5|A|3954
9PKB|1|L5|A|4056
9PKB|1|L5|C|4057
9PKB|1|L5|U|4058
9PKB|1|L5|C|4059
9PKB|1|L5|U|4060
9PKB|1|L5|G|4061
9PKB|1|L5|A|4062
9PKB|1|L5|U|4063
9PKB|1|L5|C|4064
9PKB|1|L5|G|4065
9PKB|1|L5|U|4066
9PKB|1|L5|U|4067

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain SB

40S ribosomal protein S3a