HL_9PKB_075

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9PKB|1|L5|G|4694, 9PKB|1|L5|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKB|1|L5|C|4688
9PKB|1|L5|PSU|4689
9PKB|1|L5|G|4690
9PKB|1|L5|A|4691
9PKB|1|L5|A|4692
9PKB|1|L5|C|4693
9PKB|1|L5|G|4694
9PKB|1|L5|C|4695
9PKB|1|L5|C|4696
9PKB|1|L5|U|4697
9PKB|1|L5|C|4698
9PKB|1|L5|U|4699
9PKB|1|L5|A|4700
9PKB|1|L5|A|4701
9PKB|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Large ribosomal subunit protein eL40