HL_9PKB_100

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PKB_100 not in the Motif Atlas

Homologous match to HL_9PN5_091

Geometric discrepancy: 0.0917

The information below is about HL_9PN5_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9PKB|1|S2|C|618
9PKB|1|S2|A|619
9PKB|1|S2|G|620
9PKB|1|S2|C|621
9PKB|1|S2|C|622
9PKB|1|S2|G|623

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CD

Isoform 2 of SERPINE1 mRNA-binding protein 1

Chain SX

40S ribosomal protein S23